Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs716025 chr4:78145233 G/A 8.68E-6 118 38.83 45.87 31.72 KM Plot
THYM rs7161574 chr14:80407591 G/A 1.14E-6 119 9.85 38.58 42.9 KM Plot
THYM rs71617204 chr3:53042951 G/A 0.000172 119 42.82 23.8 25.63 KM Plot
THYM rs71618625 chr4:70107717 C/G 4.7E-13 119 41.77 35 6 KM Plot
THYM rs71642289 chr6:117166029 GTA/G 4.73E-5 118 38.33 50.28 19.03 KM Plot
THYM rs7174190 chr15:78763617 C/T 3.34E-5 119 42.82 42.47 26 KM Plot
THYM rs7174348 chr15:78792439 G/A 3.52E-5 118 42.82 46.6 26 KM Plot
THYM rs7178034 chr15:93973532 A/G 4.93E-13 117 38.9 45.92 6 KM Plot
THYM rs718340 chr9:98520383 C/T 4.96E-9 118 39.75 42.73 34.87 KM Plot
THYM rs71861165 chr2:30707642 AAAGTGATTTCATTTT/A 1.29E-8 119 37.37 50.07 33.13 KM Plot
THYM rs7186308 chr16:24848471 A/G 5.19E-6 116 46.43 31.18 31.37 KM Plot
THYM rs71869598 chr2:30660894 GGTATATA/G 4.06E-6 118 38.13 50.07 33.25 KM Plot
THYM rs71886391 chr12:120929142 CTGCCAGCCCCAGGCTGG/C 1.48E-6 117 46.6 34.87 4.13 KM Plot
THYM rs7192834 chr16:77758448 G/A 8.27E-5 119 42.82 29.95 28.43 KM Plot
THYM rs7192847 chr16:77758463 G/C 0.000102 117 45.87 27.2 28.43 KM Plot